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Bartosz Bartmanski
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Effects of different discretisations of the Laplacian upon stochastic simulations of reaction-diffusion systems on both static and growing domains
Published in arXiv, 2019
Recommended citation: Bartmanski, B. J. and Baker, R. E. (2019). "Effects of different discretisations of the Laplacian upon stochastic simulations of reaction-diffusion systems on both static and growing domains." arXiv:1911.11645. https://arxiv.org/pdf/1911.11645.pdf
The status of the QSSA approximation in stochastic simulations of reaction networks
Published in 2018 MATRIX Annals, 2020
Recommended citation: Bobadilla, A. V. P., Bartmanski, B. J., Grima, R., and Othmer, H. G. (2020). "The status of the QSSA approximation in stochastic simulations of reaction networks." In 2018 MATRIX Annals (pp. 137-147). Springer, Cham. https://www.matrix-inst.org.au/wp_Matrix2016/wp-content/uploads/2019/05/Bobadilla.pdf
StoSpa2: A C++ software package for stochastic simulations of spatially extended systems
Published in Journal of Open Source Software, 2020
Recommended citation: Bartmanski, B. J. and Baker, R. E. (2020). "StoSpa2: A C++ software package for stochastic simulations of spatially extended systems." Journal of Open Source Software, 5(50), 2293. https://joss.theoj.org/papers/10.21105/joss.02293.pdf
Recent advances in data-and knowledge-driven approaches to explore primary microbial metabolism
Published in Current Opinion in Chemical Biology, 2023
Recommended citation: Bartmanski, B. J., Rocha, M., and Zimmermann-Kogadeeva, M. (2023). "Recent advances in data-and knowledge-driven approaches to explore primary microbial metabolism." Current Opinion in Chemical Biology, 75, 102324. https://www.sciencedirect.com/science/article/pii/S1367593123000625
Systematic analysis of gut bacterial carcinogen metabolism and its functional consequences
Published in bioRxiv, 2024
Recommended citation: Zhang, B., Maftei, G. E., Bartmanski, B., & Zimmermann, M. (2024). "Systematic analysis of gut bacterial carcinogen metabolism and its functional consequences." bioRxiv, 2024-05. https://www.biorxiv.org/content/10.1101/2024.05.20.595058.abstract
Pervasive sublethal effects of agrochemicals as contributing factors to insect decline
Published in Science, 2024
Recommended citation: Gandara, L., Jacoby, R., Laurent, F., Spatuzzi, M., Vlachopoulos, N., Borst, N. O., ... & Crocker, J. (2024). "Pervasive sublethal effects of agrochemicals on insects at environmentally relevant concentrations." Science, 386(6720), 446-453. https://www.science.org/doi/abs/10.1126/science.ado0251
Multi-omics profiling of cross-resistance between ceftazidime-avibactam and meropenem identifies common and strain-specific mechanisms in Pseudomonas aeruginosa clinical isolates
Published in bioRxiv, 2025
Recommended citation: Bartmanski, B. J., Bösch, A., Schmitt, S., Ireddy, N. R., Ren, Q., Findlay, J., ... & Babouee Flury, B. (2025). "Multi-omics profiling of cross-resistance between ceftazidime-avibactam and meropenem identifies common and strain-specific mechanisms in Pseudomonas aeruginosa clinical isolates." bioRxiv, 2025-01. https://www.biorxiv.org/content/10.1101/2025.01.14.632673.abstract