Software
- DualMesh
- Python module for generating dual meshes.
- StoSpa
- A C++ package for running stochastic simulations to generate sample paths for reaction-diffusion master equation (RDME). Reactions happen within a compartment, and the collection of compartments makes up the domain of the system. Diffusion of molecules is modelled as jumps between adjacent voxels.
- StoSpa2
- A C++ software package for stochastic simulations of spatially extended systems. Code-base has been completely refactored since the previous version of StoSpa. Python bindings have also been included.
- Documentation available here